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Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.181
Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.PGX1 polygalacturonase
Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00003p00197480 | |
| Cluster | HCCA: Cluster_128 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G10640 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01031298001 | No alias | Polygalacturonase At1g48100 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| Gb_13356 | No alias | Probable polygalacturonase At1g80170 OS=Arabidopsis... | 0.04 | Archaeplastida | |
| LOC_Os05g50260.1 | No alias | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.05 | Archaeplastida | |
| MA_127755g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_640601g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Smo111266 | No alias | Polygalacturonase OS=Chamaecyparis obtusa | 0.04 | Archaeplastida | |
| Solyc07g015870.4.1 | No alias | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.07 | Archaeplastida | |
| Solyc12g019140.3.1 | No alias | Polygalacturonase OS=Prunus persica... | 0.03 | Archaeplastida | |
| Solyc12g019180.2.1 | No alias | Polygalacturonase OS=Prunus persica... | 0.02 | Archaeplastida | |
| Zm00001e017465_P001 | No alias | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | IEA | Interproscan |
| BP | GO:0005975 | carbohydrate metabolic process | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004180 | carboxypeptidase activity | IEP | Neighborhood |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Neighborhood |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Neighborhood |
| MF | GO:0004568 | chitinase activity | IEP | Neighborhood |
| BP | GO:0006022 | aminoglycan metabolic process | IEP | Neighborhood |
| BP | GO:0006026 | aminoglycan catabolic process | IEP | Neighborhood |
| BP | GO:0006030 | chitin metabolic process | IEP | Neighborhood |
| BP | GO:0006032 | chitin catabolic process | IEP | Neighborhood |
| BP | GO:0006040 | amino sugar metabolic process | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006788 | heme oxidation | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008236 | serine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0008238 | exopeptidase activity | IEP | Neighborhood |
| BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0017171 | serine hydrolase activity | IEP | Neighborhood |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
| BP | GO:0042168 | heme metabolic process | IEP | Neighborhood |
| BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
| BP | GO:0042737 | drug catabolic process | IEP | Neighborhood |
| MF | GO:0042802 | identical protein binding | IEP | Neighborhood |
| BP | GO:0043086 | negative regulation of catalytic activity | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044092 | negative regulation of molecular function | IEP | Neighborhood |
| BP | GO:0046348 | amino sugar catabolic process | IEP | Neighborhood |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Neighborhood |
| BP | GO:0065009 | regulation of molecular function | IEP | Neighborhood |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
| BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000743 | Glyco_hydro_28 | 102 | 417 |
| No external refs found! |