LOC_Os03g02540.1


Description : component CSN1 of COP9 signalosome complex


Gene families : OG0004721 (Archaeplastida) Phylogenetic Tree(s): OG0004721_tree ,
OG_05_0005989 (LandPlants) Phylogenetic Tree(s): OG_05_0005989_tree ,
OG_06_0007495 (SeedPlants) Phylogenetic Tree(s): OG_06_0007495_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g02540.1
Cluster HCCA: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
AT3G61140 ATSK31, ATFUS6,... 26S proteasome, regulatory subunit Rpn7;Proteasome... 0.02 Archaeplastida
Cpa|evm.model.tig00021608.5 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
Cre05.g234300 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.06 Archaeplastida
GSVIVT01027510001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
Solyc01g091650.3.1 No alias component CSN1 of COP9 signalosome complex 0.03 Archaeplastida
Zm00001e000114_P001 No alias component CSN1 of COP9 signalosome complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000439 transcription factor TFIIH core complex IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
MF GO:0001671 ATPase activator activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019781 NEDD8 activating enzyme activity IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045116 protein neddylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019585 Rpn7/CSN1 103 277
IPR000717 PCI_dom 293 394
No external refs found!