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  5. AMTR_s00003p00209480

AMTR_s00003p00209480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.198

Description : Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana


Gene families : OG0006800 (Archaeplastida) Phylogenetic Tree(s): OG0006800_tree ,
OG_05_0005102 (LandPlants) Phylogenetic Tree(s): OG_05_0005102_tree ,
OG_06_0010515 (SeedPlants) Phylogenetic Tree(s): OG_06_0010515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00209480
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
Solyc04g071280.3.1 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.02 Archaeplastida
Solyc11g071670.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e000718_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e013118_P001 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030904 retromer complex IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0044183 protein binding involved in protein folding IEP Neighborhood
MF GO:0047800 cysteamine dioxygenase activity IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 159 185
IPR002885 Pentatricopeptide_repeat 52 78
IPR002885 Pentatricopeptide_repeat 125 151
IPR002885 Pentatricopeptide_repeat 334 360
IPR002885 Pentatricopeptide_repeat 369 394
IPR002885 Pentatricopeptide_repeat 257 305
IPR002885 Pentatricopeptide_repeat 187 234
No external refs found!