LOC_Os03g04750.1

Description : component RPL21 of LSU proteome component

Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g04750.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	Archaeplastida
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	Archaeplastida
AT1G09590	No alias	Translation protein SH3-like family protein	0.41	Archaeplastida
AT1G09690	No alias	Translation protein SH3-like family protein	0.39	Archaeplastida
AT1G57660	No alias	Translation protein SH3-like family protein	0.21	Archaeplastida
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	Archaeplastida
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.41	Archaeplastida
GSVIVT01001130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	Archaeplastida
GSVIVT01033444001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
GSVIVT01033455001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
Gb_09077	No alias	component RPL21 of LSU proteome component	0.17	Archaeplastida
MA_186351g0010	No alias	component RPL21 of LSU proteome component	0.09	Archaeplastida
MA_40819g0010	No alias	component RPL21 of LSU proteome component	0.03	Archaeplastida
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.46	Archaeplastida
Pp3c12_9320V3.1	No alias	Translation protein SH3-like family protein	0.38	Archaeplastida
Pp3c13_2360V3.1	No alias	Translation protein SH3-like family protein	0.28	Archaeplastida
Pp3c3_5550V3.1	No alias	Translation protein SH3-like family protein	0.38	Archaeplastida
Pp3c4_21520V3.1	No alias	Translation protein SH3-like family protein	0.31	Archaeplastida
Smo170832	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Solyc10g078960.2.1	No alias	component RPL21 of LSU proteome component	0.39	Archaeplastida
Solyc10g080590.2.1	No alias	component RPL21 of LSU proteome component	0.31	Archaeplastida
Zm00001e000341_P001	No alias	component RPL21 of LSU proteome component	0.29	Archaeplastida
Zm00001e004623_P001	No alias	component RPL21 of LSU proteome component	0.21	Archaeplastida
Zm00001e012727_P001	No alias	component RPL21 of LSU proteome component	0.28	Archaeplastida
Zm00001e038963_P001	No alias	component RPL21 of LSU proteome component	0.31	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

LOC_Os03g04750.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation