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  5. LOC_Os03g05440.1

LOC_Os03g05440.1


Description : UPF0496 protein 3 OS=Oryza sativa subsp. japonica (sp|q10rr9|u496c_orysj : 640.0)


Gene families : OG0002512 (Archaeplastida) Phylogenetic Tree(s): OG0002512_tree ,
OG_05_0001655 (LandPlants) Phylogenetic Tree(s): OG_05_0001655_tree ,
OG_06_0000925 (SeedPlants) Phylogenetic Tree(s): OG_06_0000925_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g05440.1
Cluster HCCA: Cluster_277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00096680 evm_27.TU.AmTr_v1... UPF0496 protein At3g19330 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00040p00067520 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G20180 No alias Protein of unknown function (DUF677) 0.03 Archaeplastida
GSVIVT01009973001 No alias UPF0496 protein At1g20180 OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_00671 No alias UPF0496 protein At3g49070 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc04g081840.4.1 No alias UPF0496 protein At1g20180 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007749 DUF677 196 370
No external refs found!