AT1G29340 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : plant U-box 17


Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000690 (LandPlants) Phylogenetic Tree(s): OG_05_0000690_tree ,
OG_06_0011588 (SeedPlants) Phylogenetic Tree(s): OG_06_0011588_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G29340
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 evm_27.TU.AmTr_v1... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00025p00052670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00072p00171260 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.1 Archaeplastida
AT3G46510 PUB13, ATPUB13 plant U-box 13 0.07 Archaeplastida
GSVIVT01016225001 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01021265001 No alias U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01023893001 No alias U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.09 Archaeplastida
GSVIVT01024985001 No alias U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01030205001 No alias U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_10627 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.06 Archaeplastida
Gb_10871 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Gb_12875 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Gb_29129 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 Archaeplastida
Gb_29276 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
LOC_Os01g60860.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g16824.1 No alias E3 ubiquitin ligase (PUB) 0.07 Archaeplastida
LOC_Os06g01304.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
LOC_Os06g51130.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os08g37570.1 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os12g38210.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_29517g0010 No alias U-box domain-containing protein 12 OS=Oryza sativa... 0.02 Archaeplastida
MA_9917294g0010 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Mp5g12560.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Pp3c20_8020V3.1 No alias plant U-box 13 0.03 Archaeplastida
Pp3c23_8770V3.1 No alias plant U-box 14 0.05 Archaeplastida
Smo231208 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc02g072080.1.1 No alias U-box domain-containing protein 17 OS=Arabidopsis... 0.08 Archaeplastida
Solyc06g076040.3.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Solyc09g056450.4.1 No alias U-box domain-containing protein 9 OS=Arabidopsis... 0.09 Archaeplastida
Solyc11g008390.2.1 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Zm00001e003398_P001 No alias U-box domain-containing protein 15 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014566_P002 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Zm00001e018161_P001 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Zm00001e024908_P001 No alias U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
BP GO:0009626 plant-type hypersensitive response IGI Interproscan
BP GO:0009814 defense response, incompatible interaction IMP Interproscan
BP GO:0009817 defense response to fungus, incompatible interaction IGI Interproscan
BP GO:0016567 protein ubiquitination IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0000165 MAPK cascade IEP Neighborhood
BP GO:0000302 response to reactive oxygen species IEP Neighborhood
CC GO:0000815 ESCRT III complex IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
BP GO:0002682 regulation of immune system process IEP Neighborhood
BP GO:0002683 negative regulation of immune system process IEP Neighborhood
BP GO:0002832 negative regulation of response to biotic stimulus IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
MF GO:0004697 protein kinase C activity IEP Neighborhood
MF GO:0004698 calcium-dependent protein kinase C activity IEP Neighborhood
MF GO:0004709 MAP kinase kinase kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0005262 calcium channel activity IEP Neighborhood
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005548 phospholipid transporter activity IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005771 multivesicular body IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006498 N-terminal protein lipidation IEP Neighborhood
BP GO:0006499 N-terminal protein myristoylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006882 cellular zinc ion homeostasis IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006900 vesicle budding from membrane IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007231 osmosensory signaling pathway IEP Neighborhood
BP GO:0007568 aging IEP Neighborhood
BP GO:0007584 response to nutrient IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009408 response to heat IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0009612 response to mechanical stimulus IEP Neighborhood
BP GO:0009617 response to bacterium IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009692 ethylene metabolic process IEP Neighborhood
BP GO:0009693 ethylene biosynthetic process IEP Neighborhood
BP GO:0009694 jasmonic acid metabolic process IEP Neighborhood
BP GO:0009695 jasmonic acid biosynthetic process IEP Neighborhood
BP GO:0009696 salicylic acid metabolic process IEP Neighborhood
BP GO:0009697 salicylic acid biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009738 abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009755 hormone-mediated signaling pathway IEP Neighborhood
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009863 salicylic acid mediated signaling pathway IEP Neighborhood
BP GO:0009867 jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009873 ethylene-activated signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009900 dehiscence IEP Neighborhood
BP GO:0009901 anther dehiscence IEP Neighborhood
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0009962 regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010193 response to ozone IEP Neighborhood
BP GO:0010200 response to chitin IEP Neighborhood
BP GO:0010243 response to organonitrogen compound IEP Neighborhood
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0010363 regulation of plant-type hypersensitive response IEP Neighborhood
BP GO:0010449 root meristem growth IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0010857 calcium-dependent protein kinase activity IEP Neighborhood
BP GO:0010941 regulation of cell death IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016045 detection of bacterium IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
MF GO:0016165 linoleate 13S-lipoxygenase activity IEP Neighborhood
MF GO:0016174 NAD(P)H oxidase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017000 antibiotic biosynthetic process IEP Neighborhood
MF GO:0017077 oxidative phosphorylation uncoupler activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018377 protein myristoylation IEP Neighborhood
BP GO:0018958 phenol-containing compound metabolic process IEP Neighborhood
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022622 root system development IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
BP GO:0023014 signal transduction by protein phosphorylation IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
BP GO:0031347 regulation of defense response IEP Neighborhood
BP GO:0031348 negative regulation of defense response IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
BP GO:0032102 negative regulation of response to external stimulus IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033500 carbohydrate homeostasis IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034976 response to endoplasmic reticulum stress IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0042446 hormone biosynthetic process IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0042537 benzene-containing compound metabolic process IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
BP GO:0042742 defense response to bacterium IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043067 regulation of programmed cell death IEP Neighborhood
BP GO:0043069 negative regulation of programmed cell death IEP Neighborhood
BP GO:0043200 response to amino acid IEP Neighborhood
CC GO:0043230 extracellular organelle IEP Neighborhood
BP GO:0043449 cellular alkene metabolic process IEP Neighborhood
BP GO:0043450 alkene biosynthetic process IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043900 regulation of multi-organism process IEP Neighborhood
BP GO:0043901 negative regulation of multi-organism process IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0045088 regulation of innate immune response IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0045824 negative regulation of innate immune response IEP Neighborhood
BP GO:0046189 phenol-containing compound biosynthetic process IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048194 Golgi vesicle budding IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0050776 regulation of immune response IEP Neighborhood
BP GO:0050777 negative regulation of immune response IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0051753 mannan synthase activity IEP Neighborhood
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Neighborhood
BP GO:0052542 defense response by callose deposition IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0055069 zinc ion homeostasis IEP Neighborhood
BP GO:0060548 negative regulation of cell death IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:0070062 extracellular exosome IEP Neighborhood
BP GO:0070417 cellular response to cold IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071470 cellular response to osmotic stress IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0080086 stamen filament development IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
BP GO:0098543 detection of other organism IEP Neighborhood
BP GO:0098581 detection of external biotic stimulus IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1900424 regulation of defense response to bacterium IEP Neighborhood
BP GO:1900425 negative regulation of defense response to bacterium IEP Neighborhood
BP GO:1900673 olefin metabolic process IEP Neighborhood
BP GO:1900674 olefin biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902065 response to L-glutamate IEP Neighborhood
BP GO:1902477 regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:1902478 negative regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
CC GO:1903561 extracellular vesicle IEP Neighborhood
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 305 373
IPR000225 Armadillo 438 476
No external refs found!