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  5. LOC_Os03g06050.1

LOC_Os03g06050.1


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06050.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00077p00060330 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.07 Archaeplastida
AT1G62980 EXPA18, EXP18,... expansin A18 0.06 Archaeplastida
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.03 Archaeplastida
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.05 Archaeplastida
AT3G15370 ATHEXP ALPHA... expansin 12 0.06 Archaeplastida
AT3G29030 EXP5, ATHEXP... expansin A5 0.03 Archaeplastida
AT3G55500 EXPA16, ATHEXP... expansin A16 0.03 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.05 Archaeplastida
AT5G05290 EXPA2, ATHEXP... expansin A2 0.03 Archaeplastida
AT5G39260 EXPA21, EXP21,... expansin A21 0.02 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.04 Archaeplastida
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01019965001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01030191001 No alias Expansin-A8 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01030192001 No alias Expansin-A2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_01500 No alias alpha-class expansin 0.05 Archaeplastida
Gb_01502 No alias alpha-class expansin 0.05 Archaeplastida
Gb_01506 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_04404 No alias alpha-class expansin 0.02 Archaeplastida
Gb_07423 No alias alpha-class expansin 0.03 Archaeplastida
Gb_07424 No alias alpha-class expansin 0.07 Archaeplastida
Gb_07437 No alias alpha-class expansin 0.04 Archaeplastida
Gb_16008 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os01g60770.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os02g16839.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os02g51040.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os03g06000.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os03g06020.1 No alias alpha-class expansin 0.07 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os03g25990.1 No alias alpha-class expansin 0.06 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.09 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.08 Archaeplastida
MA_10299189g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_114349g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_14588g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_18265g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_19117g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_30127g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_3618g0010 No alias Expansin-A15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.07 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.06 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_86877g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_8784268g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_915221g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Mp1g22700.1 No alias alpha-class expansin 0.05 Archaeplastida
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp1g22730.1 No alias alpha-class expansin 0.05 Archaeplastida
Mp1g22740.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp1g26350.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp2g18600.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp2g18610.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g06900.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g09650.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09760.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09770.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g10160.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g12280.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g22690.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g24470.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g01930.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp5g20420.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g20430.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp8g18860.1 No alias alpha-class expansin 0.03 Archaeplastida
Pp3c11_12000V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.07 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c14_18030V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.02 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.03 Archaeplastida
Pp3c21_1940V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.03 Archaeplastida
Pp3c3_16280V3.1 No alias expansin A14 0.03 Archaeplastida
Pp3c7_12870V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c8_14900V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.05 Archaeplastida
Smo102623 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
Smo174522 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo230202 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo231226 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo236978 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo75237 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo78615 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo90935 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc03g031840.3.1 No alias No annotation 0.04 Archaeplastida
Solyc03g115270.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc04g081870.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc05g052250.3.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.08 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc12g089380.2.1 No alias alpha-class expansin 0.06 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.07 Archaeplastida
Zm00001e004719_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e004721_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e014220_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e014231_P001 No alias Expansin-A13 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e014247_P001 No alias Expansin-A23 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e017334_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e019433_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e029218_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e036693_P001 No alias alpha-class expansin 0.12 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.08 Archaeplastida
Zm00001e040578_P001 No alias alpha-class expansin 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 155 232
IPR009009 RlpA-like_DPBB 59 144
No external refs found!