1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g06240.1

LOC_Os03g06240.1


Description : methylation reader (ECT)


Gene families : OG0000387 (Archaeplastida) Phylogenetic Tree(s): OG0000387_tree ,
OG_05_0000366 (LandPlants) Phylogenetic Tree(s): OG_05_0000366_tree ,
OG_06_0003902 (SeedPlants) Phylogenetic Tree(s): OG_06_0003902_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06240.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00073360 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT3G13460 ECT2 evolutionarily conserved C-terminal region 2 0.03 Archaeplastida
GSVIVT01025494001 No alias No description available 0.02 Archaeplastida
GSVIVT01036696001 No alias No description available 0.05 Archaeplastida
Gb_17619 No alias methylation reader (ECT) 0.04 Archaeplastida
MA_130754g0010 No alias methylation reader (ECT) 0.02 Archaeplastida
Solyc01g028860.3.1 No alias methylation reader (ECT) 0.07 Archaeplastida
Solyc01g103540.3.1 No alias methylation reader (ECT) 0.08 Archaeplastida
Zm00001e021575_P001 No alias methylation reader (ECT) 0.03 Archaeplastida
Zm00001e021892_P001 No alias methylation reader (ECT) 0.03 Archaeplastida
Zm00001e039003_P004 No alias methylation reader (ECT) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007275 YTH_domain 466 603
No external refs found!