1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g06670.1

LOC_Os03g06670.1


Description : histone (H2A)


Gene families : OG0001575 (Archaeplastida) Phylogenetic Tree(s): OG0001575_tree ,
OG_05_0001718 (LandPlants) Phylogenetic Tree(s): OG_05_0001718_tree ,
OG_06_0001752 (SeedPlants) Phylogenetic Tree(s): OG_06_0001752_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06670.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AT3G54560 HTA11 histone H2A 11 0.16 Archaeplastida
Cpa|evm.model.tig00021108.27 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g567700 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
GSVIVT01003139001 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Gb_04984 No alias histone (H2A) 0.02 Archaeplastida
Mp1g09020.1 No alias histone (H2A) 0.03 Archaeplastida
Pp3c4_14220V3.1 No alias histone H2A protein 9 0.02 Archaeplastida
Solyc06g084090.4.1 No alias histone (H2A) 0.1 Archaeplastida
Zm00001e005636_P001 No alias histone (H2A) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 108 137
IPR007125 Histone_H2A/H2B/H3 13 107
No external refs found!