LOC_Os03g07450.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g07450.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00215130	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00008p00214750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00010p00253290	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
AMTR_s00040p00235500	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00059p00141510	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AT1G26960	AtHB23, HB23	homeobox protein 23	0.02	Archaeplastida
AT1G69780	ATHB13	Homeobox-leucine zipper protein family	0.04	Archaeplastida
AT2G36610	ATHB22, HB22	homeobox protein 22	0.03	Archaeplastida
AT3G01220	ATHB20, HB20	homeobox protein 20	0.04	Archaeplastida
AT3G01470	ATHB1, ATHB-1,...	homeobox 1	0.07	Archaeplastida
AT3G61890	HB-12, ATHB-12, ATHB12	homeobox 12	0.02	Archaeplastida
AT4G36740	ATHB40, HB40, HB-5	homeobox protein 40	0.04	Archaeplastida
AT4G40060	ATHB16, HB16, ATHB-16	homeobox protein 16	0.02	Archaeplastida
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.02	Archaeplastida
AT5G53980	ATHB52, HB52	homeobox protein 52	0.04	Archaeplastida
AT5G65310	ATHB5, ATHB-5, HB5	homeobox protein 5	0.05	Archaeplastida
AT5G66700	ATHB53, HB53, HB-8	homeobox 53	0.01	Archaeplastida
GSVIVT01019655001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01020033001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01027407001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Gb_04698	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Gb_20878	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Gb_35116	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Gb_35959	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
LOC_Os03g08960.1	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida
LOC_Os03g10210.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os08g32080.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os08g32085.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os10g23090.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
MA_10428916g0010	No alias	transcription factor (HD-ZIP I/II)	0.06	Archaeplastida
MA_19453g0050	No alias	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis...	0.04	Archaeplastida
MA_238039g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_9241385g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Mp3g02320.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Pp3c11_23440V3.1	No alias	homeobox 1	0.1	Archaeplastida
Pp3c16_21410V3.1	No alias	homeobox 1	0.02	Archaeplastida
Pp3c17_18190V3.1	No alias	homeobox protein 16	0.08	Archaeplastida
Pp3c1_36940V3.1	No alias	homeobox protein 16	0.04	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.05	Archaeplastida
Pp3c25_13450V3.1	No alias	homeobox 1	0.01	Archaeplastida
Pp3c3_37710V3.1	No alias	homeobox 3	0.02	Archaeplastida
Pp3c6_2730V3.1	No alias	Homeobox-leucine zipper protein family	0.04	Archaeplastida
Pp3c7_2100V3.1	No alias	Homeobox-leucine zipper protein family	0.08	Archaeplastida
Pp3c8_440V3.1	No alias	homeobox 3	0.04	Archaeplastida
Smo81609	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Solyc01g010600.4.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Solyc02g067410.2.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc02g086930.4.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc02g087840.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc03g082550.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc04g074700.4.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc05g006980.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc06g053220.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc09g008810.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc10g150101.1.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e002803_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e004824_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e010004_P002	No alias	transcription factor (HD-ZIP I/II)	0.01	Archaeplastida
Zm00001e010218_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e010637_P001	No alias	transcription factor (HD-ZIP I/II)	0.01	Archaeplastida
Zm00001e012829_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e034433_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e038901_P001	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	130	183
IPR003106	Leu_zip_homeo	185	225

External Links

No external refs found!

LOC_Os03g07450.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation