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  5. AMTR_s00003p00234980

AMTR_s00003p00234980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.236

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component


Gene families : OG0001762 (Archaeplastida) Phylogenetic Tree(s): OG0001762_tree ,
OG_05_0001750 (LandPlants) Phylogenetic Tree(s): OG_05_0001750_tree ,
OG_06_0001973 (SeedPlants) Phylogenetic Tree(s): OG_06_0001973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00234980
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G29965 No alias Ribosomal protein L18ae/LX family protein 0.06 Archaeplastida
AT2G34480 No alias Ribosomal protein L18ae/LX family protein 0.27 Archaeplastida
AT3G14600 No alias Ribosomal protein L18ae/LX family protein 0.2 Archaeplastida
Cpa|evm.model.tig00000615.59 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Cre01.g047750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 Archaeplastida
GSVIVT01000485001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01021430001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
GSVIVT01021433001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Gb_05341 No alias component RPL18a of LSU proteome component 0.05 Archaeplastida
LOC_Os01g47660.1 No alias component RPL18a of LSU proteome component 0.22 Archaeplastida
LOC_Os01g54870.1 No alias component RPL18a of LSU proteome component 0.15 Archaeplastida
LOC_Os05g49030.1 No alias component RPL18a of LSU proteome component 0.18 Archaeplastida
MA_12029g0010 No alias component RPL18a of LSU proteome component 0.18 Archaeplastida
Mp1g17730.1 No alias component RPL18a of LSU proteome component 0.27 Archaeplastida
Pp3c12_7770V3.1 No alias Ribosomal protein L18ae/LX family protein 0.17 Archaeplastida
Pp3c13_12320V3.1 No alias Ribosomal protein L18ae/LX family protein 0.05 Archaeplastida
Pp3c20_15150V3.1 No alias Ribosomal protein L18ae/LX family protein 0.14 Archaeplastida
Pp3c24_18790V3.1 No alias Ribosomal protein L18ae/LX family protein 0.02 Archaeplastida
Pp3c3_11250V3.1 No alias Ribosomal protein L18ae/LX family protein 0.18 Archaeplastida
Pp3c8_13880V3.1 No alias Ribosomal protein L18ae/LX family protein 0.12 Archaeplastida
Smo227198 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Solyc02g070640.3.1 No alias component RPL18a of LSU proteome component 0.1 Archaeplastida
Solyc02g070650.2.1 No alias component RPL18a of LSU proteome component 0.08 Archaeplastida
Solyc06g065590.4.1 No alias component RPL18a of LSU proteome component 0.12 Archaeplastida
Solyc08g016180.3.1 No alias component RPL18a of LSU proteome component 0.18 Archaeplastida
Zm00001e020218_P001 No alias component RPL18a of LSU proteome component 0.15 Archaeplastida
Zm00001e026540_P001 No alias component RPL18a of LSU proteome component 0.17 Archaeplastida
Zm00001e028015_P002 No alias component RPL18a of LSU proteome component 0.13 Archaeplastida
Zm00001e032436_P001 No alias component RPL18a of LSU proteome component 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 7 128
No external refs found!