1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g08680.1

LOC_Os03g08680.1


Description : Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana (sp|q9sn39|pp320_arath : 244.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0017734 (LandPlants) Phylogenetic Tree(s): OG_05_0017734_tree ,
OG_06_0015339 (SeedPlants) Phylogenetic Tree(s): OG_06_0015339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g08680.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01005577001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
Gb_12372 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
LOC_Os01g55960.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.05 Archaeplastida
LOC_Os02g09800.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
LOC_Os03g13830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_153011g0010 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
Smo34638 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Smo82024 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e013531_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e034903_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 117
IPR002885 Pentatricopeptide_repeat 169 192
IPR002885 Pentatricopeptide_repeat 193 239
IPR002885 Pentatricopeptide_repeat 291 340
No external refs found!