LOC_Os03g09150.1


Description : Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana (sp|q9c9r6|pum7_arath : 345.0)


Gene families : OG0000964 (Archaeplastida) Phylogenetic Tree(s): OG0000964_tree ,
OG_05_0000819 (LandPlants) Phylogenetic Tree(s): OG_05_0000819_tree ,
OG_06_0001861 (SeedPlants) Phylogenetic Tree(s): OG_06_0001861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g09150.1
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
LOC_Os11g37090.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e024450_P001 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006658 phosphatidylserine metabolic process IEP Neighborhood
BP GO:0006659 phosphatidylserine biosynthetic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 541 573
IPR001313 Pumilio_RNA-bd_rpt 427 460
IPR001313 Pumilio_RNA-bd_rpt 611 636
IPR001313 Pumilio_RNA-bd_rpt 581 598
IPR001313 Pumilio_RNA-bd_rpt 474 500
IPR001313 Pumilio_RNA-bd_rpt 504 536
IPR001313 Pumilio_RNA-bd_rpt 393 424
No external refs found!