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  5. LOC_Os03g11680.1

LOC_Os03g11680.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000307 (SeedPlants) Phylogenetic Tree(s): OG_06_0000307_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g11680.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00086480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00088p00145510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G68480 JAG C2H2 and C2HC zinc fingers superfamily protein 0.05 Archaeplastida
AT1G80730 ZFP1, ATZFP1 zinc-finger protein 1 0.02 Archaeplastida
AT2G42410 ZFP11, ATZFP11 zinc finger protein 11 0.03 Archaeplastida
AT3G23130 SUP, FLO10, FON1 C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT5G06650 GIS2 C2H2 and C2HC zinc fingers superfamily protein 0.05 Archaeplastida
AT5G27880 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
AT5G48890 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT5G57520 ATZFP2, ZFP2 zinc finger protein 2 0.02 Archaeplastida
GSVIVT01009401001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01011868001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01027720001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01031007001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_26860 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g13600.2 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
LOC_Os09g38610.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_10430024g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_48488g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c11_13030V3.1 No alias zinc-finger protein 10 0.02 Archaeplastida
Pp3c20_10790V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_2190V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_800V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_861V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_960V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
Pp3c26_13140V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Archaeplastida
Pp3c3_21050V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c3_5040V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Solyc03g117070.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc05g006310.3.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc09g011120.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc09g089590.1.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e008019_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e010687_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e013379_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e025746_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e032639_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034219_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e034220_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e034221_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!