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  5. LOC_Os03g11890.1

LOC_Os03g11890.1


Description : Protein OBERON 4 OS=Arabidopsis thaliana (sp|q84ti3|obe4_arath : 384.0)


Gene families : OG0001005 (Archaeplastida) Phylogenetic Tree(s): OG0001005_tree ,
OG_05_0000637 (LandPlants) Phylogenetic Tree(s): OG_05_0000637_tree ,
OG_06_0001521 (SeedPlants) Phylogenetic Tree(s): OG_06_0001521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g11890.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00104550 evm_27.TU.AmTr_v1... Protein OBERON 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01032137001 No alias Protein OBERON 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_08662 No alias OBERON-like protein OS=Nicotiana benthamiana... 0.03 Archaeplastida
MA_214119g0010 No alias Protein OBERON 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c16_12370V3.1 No alias Protein of unknown function (DUF1423) 0.02 Archaeplastida
Pp3c20_20250V3.1 No alias Protein of unknown function (DUF1423) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032535 Oberon_cc 1327 1428
IPR032881 Oberon_PHD 1086 1209
No external refs found!