LOC_Os03g12860.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000355 (Archaeplastida) Phylogenetic Tree(s): OG0000355_tree ,
OG_05_0000278 (LandPlants) Phylogenetic Tree(s): OG_05_0000278_tree ,
OG_06_0000297 (SeedPlants) Phylogenetic Tree(s): OG_06_0000297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g12860.1
Cluster	HCCA: Cluster_291

Target	Alias	Description	ECC score	Gene Family Method
AT2G22800	HAT9	Homeobox-leucine zipper protein family	0.05	Archaeplastida
AT5G06710	HAT14	homeobox from Arabidopsis thaliana	0.03	Archaeplastida
LOC_Os04g46350.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os06g04870.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os10g41230.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
MA_60457g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_8378650g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_860238g0010	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Pp3c11_21670V3.1	No alias	homeobox from Arabidopsis thaliana	0.03	Archaeplastida
Pp3c15_21200V3.1	No alias	homeobox from Arabidopsis thaliana	0.02	Archaeplastida
Pp3c9_22420V3.1	No alias	Homeobox-leucine zipper protein family	0.05	Archaeplastida
Solyc08g007270.4.1	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida
Zm00001e000928_P002	No alias	transcription factor (HD-ZIP I/II)	0.06	Archaeplastida
Zm00001e007343_P003	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e009939_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e020345_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e025216_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e038644_P001	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	182	216
IPR001356	Homeobox_dom	126	180

External Links

No external refs found!

LOC_Os03g12860.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation