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  5. LOC_Os03g12940.1

LOC_Os03g12940.1


Description : transcription factor (bHLH). component FBX of SCF E3 ubiquitin ligase complex. transcriptional regulator (CIB)


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000091 (LandPlants) Phylogenetic Tree(s): OG_05_0000091_tree ,
OG_06_0014038 (SeedPlants) Phylogenetic Tree(s): OG_06_0014038_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12940.1
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.04 Archaeplastida
AMTR_s00129p00124210 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AMTR_s00133p00027110 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AT2G42300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01004930001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01007389001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
GSVIVT01008628001 No alias External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
GSVIVT01011873001 No alias External stimuli response.light.UV-A/blue... 0.04 Archaeplastida
GSVIVT01021032001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
LOC_Os03g58330.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc06g072520.2.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 Archaeplastida
Solyc09g065820.4.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e010540_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e022005_P003 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e034446_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Archaeplastida
Zm00001e034528_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 637 685
IPR001810 F-box_dom 342 384
No external refs found!