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  5. LOC_Os03g15350.1

LOC_Os03g15350.1


Description : component HRD3 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0002477 (Archaeplastida) Phylogenetic Tree(s): OG0002477_tree ,
OG_05_0006435 (LandPlants) Phylogenetic Tree(s): OG_05_0006435_tree ,
OG_06_0008548 (SeedPlants) Phylogenetic Tree(s): OG_06_0008548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g15350.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
MA_10436773g0040 No alias ERAD-associated E3 ubiquitin-protein ligase component... 0.03 Archaeplastida
Smo118981 No alias Protein degradation.ER-associated protein degradation... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011716 TPR-3 195 215
IPR006597 Sel1-like 311 343
IPR006597 Sel1-like 536 559
IPR006597 Sel1-like 419 453
IPR006597 Sel1-like 386 417
IPR006597 Sel1-like 157 190
IPR006597 Sel1-like 274 309
IPR006597 Sel1-like 571 601
IPR006597 Sel1-like 347 380
IPR006597 Sel1-like 468 486
No external refs found!