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  5. LOC_Os03g15790.1

LOC_Os03g15790.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000798 (Archaeplastida) Phylogenetic Tree(s): OG0000798_tree ,
OG_05_0000584 (LandPlants) Phylogenetic Tree(s): OG_05_0000584_tree ,
OG_06_0001187 (SeedPlants) Phylogenetic Tree(s): OG_06_0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g15790.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00197580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
AMTR_s00029p00226800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00199p00026650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G11490 No alias zinc finger (C2H2 type) family protein 0.05 Archaeplastida
AT4G27240 No alias zinc finger (C2H2 type) family protein 0.05 Archaeplastida
GSVIVT01004470001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01014576001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01024778001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
Gb_08005 No alias C2H2 zinc finger transcription factor. sugar efflux... 0.01 Archaeplastida
Gb_25842 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_30270 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_31385 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g57650.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
LOC_Os04g59380.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
MA_103943g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10426153g0010 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_525155g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_5608g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Pp3c23_13220V3.1 No alias zinc finger protein-related 0.03 Archaeplastida
Smo236040 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 Archaeplastida
Solyc02g079920.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc04g081370.2.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc07g063970.3.1 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Zm00001e008786_P002 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e019606_P002 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e028937_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!