LOC_Os03g17100.1

Description : histone (H2A)

Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g17100.1
Cluster	HCCA: Cluster_310

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00158560	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
AMTR_s00115p00128810	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AT1G08880	GAMMA-H2AX,...	Histone superfamily protein	0.05	Archaeplastida
AT1G51060	HTA10	histone H2A 10	0.12	Archaeplastida
AT1G54690	GAMMA-H2AX,...	gamma histone variant H2AX	0.03	Archaeplastida
AT3G20670	HTA13	histone H2A 13	0.12	Archaeplastida
AT4G27230	HTA2	histone H2A 2	0.06	Archaeplastida
AT5G27670	HTA7	histone H2A 7	0.04	Archaeplastida
AT5G59870	HTA6	histone H2A 6	0.11	Archaeplastida
Cre06.g264750	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g264950	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g265350	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g266700	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g268050	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g268300	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g271350	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g273900	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g274200	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g274800	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g275850	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g276500	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre06.g276950	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre12.g504500	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre12.g504750	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre12.g505550	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre12.g506250	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre13.g570100	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre13.g590800	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Cre13.g591150	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Cre17.g708550	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre17.g709200	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre17.g710400	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g711700	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre17.g713400	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Cre17.g714500	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
GSVIVT01002735001	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
GSVIVT01002746001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01011034001	No alias	Chromatin organisation.histones.H2A-type histone	0.09	Archaeplastida
GSVIVT01014580001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01025019001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01031123001	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Gb_06384	No alias	histone (H2A)	0.03	Archaeplastida
Gb_07070	No alias	histone (H2A)	0.04	Archaeplastida
Gb_12570	No alias	histone (H2A)	0.02	Archaeplastida
Gb_25326	No alias	histone (H2A)	0.06	Archaeplastida
LOC_Os12g25120.1	No alias	histone (H2A)	0.03	Archaeplastida
MA_10425800g0010	No alias	histone (H2A)	0.02	Archaeplastida
MA_10426943g0010	No alias	histone (H2A)	0.04	Archaeplastida
MA_169054g0020	No alias	histone (H2A)	0.03	Archaeplastida
MA_213048g0010	No alias	histone (H2A)	0.04	Archaeplastida
MA_22203g0020	No alias	histone (H2A)	0.05	Archaeplastida
MA_427046g0010	No alias	histone (H2A)	0.03	Archaeplastida
MA_94328g0020	No alias	histone (H2A)	0.04	Archaeplastida
MA_962778g0010	No alias	histone (H2A)	0.04	Archaeplastida
Mp2g00760.1	No alias	histone (H2A)	0.04	Archaeplastida
Mp3g00840.1	No alias	histone (H2A)	0.07	Archaeplastida
Pp3c5_1800V3.1	No alias	histone H2A 10	0.01	Archaeplastida
Pp3c6_29410V3.1	No alias	histone H2A 10	0.04	Archaeplastida
Smo166626	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Smo170948	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Smo73637	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Smo76653	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Solyc01g099410.3.1	No alias	histone (H2A)	0.14	Archaeplastida
Solyc03g005220.4.1	No alias	histone (H2A)	0.02	Archaeplastida
Solyc06g084430.4.1	No alias	histone (H2A)	0.06	Archaeplastida
Solyc09g010400.3.1	No alias	histone (H2A)	0.14	Archaeplastida
Solyc09g074300.1.1	No alias	histone (H2A)	0.06	Archaeplastida
Solyc09g082710.3.1	No alias	histone (H2A)	0.03	Archaeplastida
Solyc10g006560.4.1	No alias	histone (H2A)	0.05	Archaeplastida
Solyc11g073250.2.1	No alias	histone (H2A)	0.18	Archaeplastida
Solyc12g005270.2.1	No alias	histone (H2A)	0.05	Archaeplastida
Zm00001e010232_P001	No alias	histone (H2A)	0.07	Archaeplastida
Zm00001e010515_P001	No alias	histone (H2A)	0.07	Archaeplastida
Zm00001e011643_P001	No alias	histone (H2A)	0.11	Archaeplastida
Zm00001e012144_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e020483_P001	No alias	histone (H2A)	0.11	Archaeplastida
Zm00001e033014_P001	No alias	histone (H2A)	0.13	Archaeplastida
Zm00001e034815_P001	No alias	histone (H2A)	0.08	Archaeplastida
Zm00001e035183_P002	No alias	histone (H2A)	0.08	Archaeplastida
Zm00001e038465_P002	No alias	histone (H2A)	0.08	Archaeplastida
Zm00001e039735_P001	No alias	histone (H2A)	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEP	Neighborhood
MF	GO:0003774	motor activity	IEP	Neighborhood
MF	GO:0003777	microtubule motor activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007018	microtubule-based movement	IEP	Neighborhood
BP	GO:0007059	chromosome segregation	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0008017	microtubule binding	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0045132	meiotic chromosome segregation	IEP	Neighborhood
CC	GO:0098687	chromosomal region	IEP	Neighborhood
BP	GO:0098813	nuclear chromosome segregation	IEP	Neighborhood
BP	GO:1903046	meiotic cell cycle process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	105	138
IPR007125	Histone_H2A/H2B/H3	20	102

External Links

No external refs found!

LOC_Os03g17100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation