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  5. LOC_Os03g17510.1

LOC_Os03g17510.1


Description : Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana (sp|q9zut5|pp191_arath : 536.0)


Gene families : OG0011023 (Archaeplastida) Phylogenetic Tree(s): OG0011023_tree ,
OG_05_0009848 (LandPlants) Phylogenetic Tree(s): OG_05_0009848_tree ,
OG_06_0012961 (SeedPlants) Phylogenetic Tree(s): OG_06_0012961_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17510.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT2G37310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.09 Archaeplastida
Gb_21434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
Solyc01g090390.1.1 No alias RNA editing factor (AHG11) 0.08 Archaeplastida
Solyc09g007050.1.1 No alias Pentatricopeptide repeat-containing protein At2g37310... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 290 319
IPR002885 Pentatricopeptide_repeat 394 414
IPR002885 Pentatricopeptide_repeat 183 210
IPR002885 Pentatricopeptide_repeat 322 349
IPR002885 Pentatricopeptide_repeat 260 287
IPR002885 Pentatricopeptide_repeat 155 181
IPR002885 Pentatricopeptide_repeat 495 518
IPR002885 Pentatricopeptide_repeat 420 467
No external refs found!