LOC_Os03g18570.1

Description : component RPS7 of SSU proteome

Gene families : OG0002388 (Archaeplastida) Phylogenetic Tree(s): OG0002388_tree ,
OG_05_0002780 (LandPlants) Phylogenetic Tree(s): OG_05_0002780_tree ,
OG_06_0002847 (SeedPlants) Phylogenetic Tree(s): OG_06_0002847_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g18570.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00257730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	Archaeplastida
AMTR_s00056p00135710	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT1G48830	No alias	Ribosomal protein S7e family protein	0.06	Archaeplastida
AT3G02560	No alias	Ribosomal protein S7e family protein	0.42	Archaeplastida
AT5G16130	No alias	Ribosomal protein S7e family protein	0.38	Archaeplastida
Cpa\|evm.model.tig00021682.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.38	Archaeplastida
Cre12.g498900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.36	Archaeplastida
GSVIVT01008307001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	Archaeplastida
GSVIVT01031018001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	Archaeplastida
Gb_33823	No alias	component RPS7 of SSU proteome	0.19	Archaeplastida
MA_52277g0010	No alias	component RPS7 of SSU proteome	0.12	Archaeplastida
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.46	Archaeplastida
Pp3c20_1360V3.1	No alias	Ribosomal protein S7e family protein	0.4	Archaeplastida
Pp3c23_18280V3.1	No alias	Ribosomal protein S7e family protein	0.41	Archaeplastida
Pp3c24_18220V3.1	No alias	Ribosomal protein S7e family protein	0.27	Archaeplastida
Pp3c8_22480V3.1	No alias	Ribosomal protein S7e family protein	0.39	Archaeplastida
Smo148446	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	Archaeplastida
Solyc03g119360.3.1	No alias	component RPS7 of SSU proteome	0.42	Archaeplastida
Solyc06g069090.3.1	No alias	component RPS7 of SSU proteome	0.39	Archaeplastida
Zm00001e001349_P002	No alias	component RPS7 of SSU proteome	0.49	Archaeplastida
Zm00001e038391_P004	No alias	component RPS7 of SSU proteome	0.4	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
BP	GO:0000105	histidine biosynthetic process	IEP	Neighborhood
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006547	histidine metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	7	187

External Links

No external refs found!

LOC_Os03g18570.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation