Description : phytochrome photoreceptor (PHY). temperature sensor protein (PHY-B)

Gene families : OG0000908 (Archaeplastida) Phylogenetic Tree(s): OG0000908_tree ,
OG_05_0000972 (LandPlants) Phylogenetic Tree(s): OG_05_0000972_tree ,
OG_06_0004471 (SeedPlants) Phylogenetic Tree(s): OG_06_0004471_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: LOC_Os03g19590.1
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
AT4G18130 PHYE phytochrome E 0.05 Archaeplastida
Gb_21967 No alias phytochrome photoreceptor (PHY) 0.04 Archaeplastida
MA_6809g0020 No alias phytochrome photoreceptor (PHY) 0.02 Archaeplastida
Solyc07g045480.3.1 No alias phytochrome photoreceptor (PHY) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
BP GO:0009584 detection of visible light IEA Interproscan
BP GO:0018298 protein-chromophore linkage IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 940 999
IPR013654 PAS_2 105 226
IPR013767 PAS_fold 795 914
IPR013767 PAS_fold 664 779
IPR013515 Phytochrome_cen-reg 455 630
IPR003594 HATPase_C 1048 1158
IPR003018 GAF 260 442
No external refs found!