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  5. LOC_Os03g20900.1

LOC_Os03g20900.1


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000069 (LandPlants) Phylogenetic Tree(s): OG_05_0000069_tree ,
OG_06_0000042 (SeedPlants) Phylogenetic Tree(s): OG_06_0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g20900.1
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00190540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00094p00028710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00142p00049490 evm_27.TU.AmTr_v1... Nutrient uptake.phosphorus assimilation.phosphate... 0.03 Archaeplastida
AT1G14600 No alias Homeodomain-like superfamily protein 0.06 Archaeplastida
AT1G79430 APL, WDY Homeodomain-like superfamily protein 0.03 Archaeplastida
AT3G04030 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
AT3G12730 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
AT5G06800 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
AT5G45580 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
GSVIVT01033381001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
GSVIVT01036717001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_17437 No alias G2-like GARP transcription factor 0.02 Archaeplastida
LOC_Os02g07170.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os02g47190.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
LOC_Os03g03760.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os05g40960.1 No alias G2-like GARP transcription factor 0.06 Archaeplastida
LOC_Os06g35140.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os06g45410.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os06g45890.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_10432937g0010 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_201937g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_218023g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c12_10900V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c3_14670V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c3_34900V3.1 No alias myb-like HTH transcriptional regulator family protein 0.04 Archaeplastida
Pp3c4_23130V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Smo438638 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo441930 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Solyc02g080730.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc05g007890.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g055940.3.1 No alias PHR1 transcription factor involved in proline synthesis... 0.04 Archaeplastida
Solyc06g051060.4.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc07g045000.4.1 No alias Putative Myb family transcription factor At1g14600... 0.03 Archaeplastida
Solyc09g091880.4.1 No alias G2-like GARP transcription factor. transcription factor (PHR1) 0.04 Archaeplastida
Solyc10g083340.3.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Solyc10g085620.2.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Solyc12g006280.3.1 No alias Putative Myb family transcription factor At1g14600... 0.03 Archaeplastida
Solyc12g017370.3.1 No alias G2-like GARP transcription factor 0.08 Archaeplastida
Zm00001e001526_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e005797_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e013626_P001 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e013758_P003 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e023282_P002 No alias G2-like GARP transcription factor 0.07 Archaeplastida
Zm00001e027318_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e030364_P002 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e037731_P001 No alias G2-like GARP transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 49 100
IPR025756 Myb_CC_LHEQLE 149 195
No external refs found!