LOC_Os03g21530.1


Description : no hits & (original description: none)


Gene families : OG0005232 (Archaeplastida) Phylogenetic Tree(s): OG0005232_tree ,
OG_05_0006385 (LandPlants) Phylogenetic Tree(s): OG_05_0006385_tree ,
OG_06_0006872 (SeedPlants) Phylogenetic Tree(s): OG_06_0006872_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g21530.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00107190 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G06720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
Cpa|evm.model.tig00000478.23 No alias No description available 0.03 Archaeplastida
Cre10.g445600 No alias No description available 0.08 Archaeplastida
GSVIVT01020936001 No alias No description available 0.03 Archaeplastida
MA_1023g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp2g20920.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c13_14960V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
Solyc01g097640.3.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e001569_P002 No alias no hits & (original description: none) 0.17 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007034 BMS1_TSR1_C 697 1017
IPR012948 AARP2CN 235 320
No external refs found!