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  5. LOC_Os03g22900.1

LOC_Os03g22900.1


Description : ATPase component Ino80 of chromatin remodelling complex


Gene families : OG0006593 (Archaeplastida) Phylogenetic Tree(s): OG0006593_tree ,
OG_05_0006306 (LandPlants) Phylogenetic Tree(s): OG_05_0006306_tree ,
OG_06_0008936 (SeedPlants) Phylogenetic Tree(s): OG_06_0008936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22900.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01033231001 No alias Chromatin organisation.chromatin remodeling... 0.11 Archaeplastida
Gb_04007 No alias ATPase component Ino80 of chromatin remodelling complex 0.05 Archaeplastida
MA_3312g0010 No alias ATPase component Ino80 of chromatin remodelling complex 0.07 Archaeplastida
Mp8g00130.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.08 Archaeplastida
Pp3c1_3340V3.1 No alias INO80 ortholog 0.07 Archaeplastida
Pp3c2_32501V3.1 No alias INO80 ortholog 0.06 Archaeplastida
Smo444050 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Solyc04g016370.3.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.14 Archaeplastida
Zm00001e001678_P001 No alias ATPase component Ino80 of chromatin remodelling complex 0.25 Archaeplastida
Zm00001e038194_P002 No alias ATPase component Ino80 of chromatin remodelling complex 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 582 637
IPR000330 SNF2_N 642 823
IPR001650 Helicase_C 1143 1252
IPR020838 DBINO 343 472
No external refs found!