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  5. LOC_Os03g25920.1

LOC_Os03g25920.1


Description : amino acid transporter (LAT)


Gene families : OG0000896 (Archaeplastida) Phylogenetic Tree(s): OG0000896_tree ,
OG_05_0000706 (LandPlants) Phylogenetic Tree(s): OG_05_0000706_tree ,
OG_06_0005574 (SeedPlants) Phylogenetic Tree(s): OG_06_0005574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g25920.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00198660 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.07 Archaeplastida
AMTR_s00217p00018260 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 Archaeplastida
AMTR_s00217p00020070 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 Archaeplastida
Pp3c3_18940V3.1 No alias Amino acid permease family protein 0.03 Archaeplastida
Solyc01g005920.3.1 No alias amino acid transporter (LAT) 0.03 Archaeplastida
Solyc08g005540.2.1 No alias amino acid transporter (LAT) 0.04 Archaeplastida
Zm00001e001819_P002 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e001820_P001 No alias amino acid transporter (LAT) 0.08 Archaeplastida
Zm00001e015550_P001 No alias amino acid transporter (LAT) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
InterPro domains Description Start Stop
IPR002293 AA/rel_permease1 46 435
No external refs found!