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  5. LOC_Os03g26630.1

LOC_Os03g26630.1


Description : component ACINUS of RNA quality control Exon Junction complex


Gene families : OG0002679 (Archaeplastida) Phylogenetic Tree(s): OG0002679_tree ,
OG_05_0002265 (LandPlants) Phylogenetic Tree(s): OG_05_0002265_tree ,
OG_06_0002102 (SeedPlants) Phylogenetic Tree(s): OG_06_0002102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g26630.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00067890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
GSVIVT01008977001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
GSVIVT01022190001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
MA_7197g0010 No alias component ACINUS of RNA quality control Exon Junction complex 0.02 Archaeplastida
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.05 Archaeplastida
Solyc04g072670.4.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.04 Archaeplastida
Zm00001e037964_P002 No alias component ACINUS of RNA quality control Exon Junction complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0044599 AP-5 adaptor complex IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032552 RSB_motif 660 712
IPR003034 SAP_dom 14 42
No external refs found!