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  5. LOC_Os03g31594.1

LOC_Os03g31594.1


Description : histone demethylase (KDM3). transcription factor (JUMONJI)


Gene families : OG0000515 (Archaeplastida) Phylogenetic Tree(s): OG0000515_tree ,
OG_05_0000563 (LandPlants) Phylogenetic Tree(s): OG_05_0000563_tree ,
OG_06_0000492 (SeedPlants) Phylogenetic Tree(s): OG_06_0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g31594.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00058110 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
AMTR_s00057p00206860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
AT4G00990 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
GSVIVT01031115001 No alias Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana 0.05 Archaeplastida
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.11 Archaeplastida
MA_126442g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
MA_136209g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.06 Archaeplastida
MA_8576373g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g05610.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Pp3c16_210V3.1 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
Pp3c17_5410V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.05 Archaeplastida
Pp3c4_21970V3.1 No alias transcription factor jumonji (jmjC) domain-containing protein 0.06 Archaeplastida
Solyc02g078790.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.09 Archaeplastida
Solyc02g079300.3.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
Solyc08g065800.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e025393_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.15 Archaeplastida
Zm00001e038213_P003 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR018866 Znf-4CXXC_R1 203 270
IPR003347 JmjC_dom 851 954
No external refs found!