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  5. LOC_Os03g32180.1

LOC_Os03g32180.1


Description : Polygalacturonase inhibitor OS=Pyrus communis (sp|q05091|pgip_pyrco : 139.0)


Gene families : OG0004064 (Archaeplastida) Phylogenetic Tree(s): OG0004064_tree ,
OG_05_0002955 (LandPlants) Phylogenetic Tree(s): OG_05_0002955_tree ,
OG_06_0001891 (SeedPlants) Phylogenetic Tree(s): OG_06_0001891_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g32180.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT5G06870 PGIP2, ATPGIP2 polygalacturonase inhibiting protein 2 0.04 Archaeplastida
LOC_Os07g38130.1 No alias pathogen polygalacturonase inhibitor (PGIP) 0.03 Archaeplastida
LOC_Os08g39940.1 No alias Polygalacturonase inhibitor 1 OS=Oryza sativa subsp.... 0.01 Archaeplastida
LOC_Os09g31450.1 No alias pathogen polygalacturonase inhibitor (PGIP) 0.02 Archaeplastida
Solyc09g014480.3.1 No alias pathogen polygalacturonase inhibitor (PGIP) 0.03 Archaeplastida
Zm00001e029700_P001 No alias pathogen polygalacturonase inhibitor (PGIP) 0.03 Archaeplastida
Zm00001e035292_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 35 72
No external refs found!