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  5. LOC_Os03g38000.1

LOC_Os03g38000.1


Description : component RPS3 of SSU proteome


Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree ,
OG_06_0002250 (SeedPlants) Phylogenetic Tree(s): OG_06_0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g38000.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AT2G31610 No alias Ribosomal protein S3 family protein 0.1 Archaeplastida
AT3G53870 No alias Ribosomal protein S3 family protein 0.16 Archaeplastida
AT5G35530 No alias Ribosomal protein S3 family protein 0.42 Archaeplastida
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 Archaeplastida
GSVIVT01015110001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
GSVIVT01035451001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Gb_26536 No alias component RPS3 of SSU proteome 0.15 Archaeplastida
Gb_26539 No alias component RPS3 of SSU proteome 0.02 Archaeplastida
MA_10436283g0010 No alias component RPS3 of SSU proteome 0.2 Archaeplastida
MA_120861g0010 No alias component RPS3 of SSU proteome 0.19 Archaeplastida
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.46 Archaeplastida
Pp3c11_22640V3.1 No alias Ribosomal protein S3 family protein 0.39 Archaeplastida
Pp3c15_21360V3.1 No alias Ribosomal protein S3 family protein 0.21 Archaeplastida
Pp3c16_3760V3.1 No alias Ribosomal protein S3 family protein 0.17 Archaeplastida
Pp3c5_5330V3.1 No alias Ribosomal protein S3 family protein 0.19 Archaeplastida
Pp3c7_2620V3.1 No alias Ribosomal protein S3 family protein 0.29 Archaeplastida
Pp3c9_12170V3.1 No alias Ribosomal protein S3 family protein 0.31 Archaeplastida
Smo270414 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Smo270666 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Smo438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Solyc07g041310.3.1 No alias component RPS3 of SSU proteome 0.3 Archaeplastida
Solyc08g061843.1.1 No alias component RPS3 of SSU proteome 0.34 Archaeplastida
Zm00001e021687_P001 No alias component RPS3 of SSU proteome 0.42 Archaeplastida
Zm00001e035528_P001 No alias component RPS3 of SSU proteome 0.04 Archaeplastida
Zm00001e040177_P002 No alias component RPS3 of SSU proteome 0.39 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!