LOC_Os03g47022.1

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g47022.1
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00178300	evm_27.TU.AmTr_v1...	Homeobox protein HD1 OS=Brassica napus	0.04	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.05	Archaeplastida
Cre08.g375400	No alias	RNA biosynthesis.transcriptional activation.HB...	0.01	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
MA_10428446g0010	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Pp3c18_18750V3.1	No alias	KNOTTED1-like homeobox gene 6	0.01	Archaeplastida
Pp3c19_5610V3.1	No alias	No annotation	0.01	Archaeplastida
Pp3c19_5620V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.02	Archaeplastida
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.01	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e012293_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	61	102
IPR005541	KNOX2	115	160

External Links

No external refs found!