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  5. AMTR_s00004p00044800

AMTR_s00004p00044800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.27

Description : Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007784 (Archaeplastida) Phylogenetic Tree(s): OG0007784_tree ,
OG_05_0009406 (LandPlants) Phylogenetic Tree(s): OG_05_0009406_tree ,
OG_06_0010572 (SeedPlants) Phylogenetic Tree(s): OG_06_0010572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00044800
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AT4G14890 FdC2 2Fe-2S ferredoxin-like superfamily protein 0.03 Archaeplastida
Cre07.g334800 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017981001 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_40918 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g45710.1 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp5g15920.1 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e005218_P001 No alias Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001041 2Fe-2S_ferredoxin-type 66 133
No external refs found!