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  5. LOC_Os03g49170.1

LOC_Os03g49170.1


Description : mRNA-binding regulatory factor (TZF)


Gene families : OG0002052 (Archaeplastida) Phylogenetic Tree(s): OG0002052_tree ,
OG_05_0001758 (LandPlants) Phylogenetic Tree(s): OG_05_0001758_tree ,
OG_06_0001743 (SeedPlants) Phylogenetic Tree(s): OG_06_0001743_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g49170.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01025263001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 Archaeplastida
GSVIVT01032807001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 Archaeplastida
MA_17746g0010 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
Solyc01g087170.3.1 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
Solyc03g063680.3.1 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida
Solyc05g052570.3.1 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida
Zm00001e012238_P001 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 326 346
IPR020683 Ankyrin_rpt-contain_dom 108 177
No external refs found!