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  5. LOC_Os03g50090.2

LOC_Os03g50090.2


Description : RNA helicase (Prp28)


Gene families : OG0003123 (Archaeplastida) Phylogenetic Tree(s): OG0003123_tree ,
OG_05_0003178 (LandPlants) Phylogenetic Tree(s): OG_05_0003178_tree ,
OG_06_0005237 (SeedPlants) Phylogenetic Tree(s): OG_06_0005237_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50090.2
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
MA_618250g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c2_34920V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Smo149865 No alias RNA processing.RNA splicing.spliceosome... 0.05 Archaeplastida
Smo165735 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Solyc02g081290.4.1 No alias RNA helicase (Prp28) 0.03 Archaeplastida
Zm00001e005420_P001 No alias RNA helicase (Prp28) 0.07 Archaeplastida
Zm00001e012203_P002 No alias RNA helicase (Prp28) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 340 530
IPR001650 Helicase_C 564 673
No external refs found!