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  5. LOC_Os03g50500.1

LOC_Os03g50500.1


Description : Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana (sp|q8vze4|pp299_arath : 560.0)


Gene families : OG0010481 (Archaeplastida) Phylogenetic Tree(s): OG0010481_tree ,
OG_05_0010472 (LandPlants) Phylogenetic Tree(s): OG_05_0010472_tree ,
OG_06_0009439 (SeedPlants) Phylogenetic Tree(s): OG_06_0009439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50500.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AT4G01570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_39532 No alias Pentatricopeptide repeat-containing protein At4g01570... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 647 676
IPR002885 Pentatricopeptide_repeat 228 253
IPR002885 Pentatricopeptide_repeat 611 635
IPR002885 Pentatricopeptide_repeat 405 437
IPR002885 Pentatricopeptide_repeat 332 380
IPR002885 Pentatricopeptide_repeat 679 723
IPR002885 Pentatricopeptide_repeat 260 309
No external refs found!