Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.59
Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00004p00076010 | |
Cluster | HCCA: Cluster_153 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G11290 | CRR22 | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT1G15510 | VAC1, ECB2, ATECB2 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Archaeplastida | |
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT2G02980 | OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
AT2G22070 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Archaeplastida | |
AT3G22150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G57430 | OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G61170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT3G63370 | OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
Cre08.g358250 | No alias | Pentatricopeptide repeat-containing protein At5g02860... | 0.03 | Archaeplastida | |
GSVIVT01000244001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Archaeplastida | |
GSVIVT01008965001 | No alias | Pentatricopeptide repeat-containing protein At4g18520,... | 0.03 | Archaeplastida | |
GSVIVT01009227001 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.05 | Archaeplastida | |
GSVIVT01009407001 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Archaeplastida | |
GSVIVT01009789001 | No alias | Pentatricopeptide repeat-containing protein At1g19720... | 0.07 | Archaeplastida | |
GSVIVT01011333001 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.03 | Archaeplastida | |
GSVIVT01011479001 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.05 | Archaeplastida | |
GSVIVT01012461001 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
GSVIVT01020091001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01021023001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
GSVIVT01021246001 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Archaeplastida | |
GSVIVT01023971001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.04 | Archaeplastida | |
GSVIVT01024493001 | No alias | Pentatricopeptide repeat-containing protein At4g39952,... | 0.03 | Archaeplastida | |
GSVIVT01024870001 | No alias | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | Archaeplastida | |
GSVIVT01037944001 | No alias | Pentatricopeptide repeat-containing protein At1g50270... | 0.02 | Archaeplastida | |
Gb_23320 | No alias | RNA editing factor (OTP82) | 0.03 | Archaeplastida | |
Gb_26816 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
LOC_Os01g01115.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
LOC_Os01g10800.1 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Archaeplastida | |
LOC_Os02g50280.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | Archaeplastida | |
LOC_Os03g04390.1 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.02 | Archaeplastida | |
LOC_Os03g59264.1 | No alias | lectin chaperone (CRT) | 0.06 | Archaeplastida | |
LOC_Os04g39410.1 | No alias | RNA editing factor (OTP86) | 0.07 | Archaeplastida | |
LOC_Os05g38190.2 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.02 | Archaeplastida | |
LOC_Os05g49920.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.03 | Archaeplastida | |
LOC_Os05g50950.1 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.05 | Archaeplastida | |
MA_100287g0010 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida | |
MA_141034g0010 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Archaeplastida | |
MA_285318g0010 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | Archaeplastida | |
MA_653417g0010 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | Archaeplastida | |
Pp3c22_1710V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
Pp3c24_8560V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
Smo399 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.02 | Archaeplastida | |
Solyc01g007850.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.04 | Archaeplastida | |
Solyc01g095690.2.1 | No alias | Pentatricopeptide repeat-containing protein At4g01030,... | 0.03 | Archaeplastida | |
Solyc01g098150.3.1 | No alias | Pentatricopeptide repeat-containing protein At5g03800... | 0.02 | Archaeplastida | |
Solyc02g071300.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g46460,... | 0.02 | Archaeplastida | |
Solyc02g082160.2.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | Archaeplastida | |
Solyc02g088470.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.02 | Archaeplastida | |
Solyc03g119950.1.1 | No alias | RNA editing factor (ECB2/VAC1) | 0.02 | Archaeplastida | |
Solyc05g013200.1.1 | No alias | RNA editing factor (OTP85) | 0.03 | Archaeplastida | |
Solyc06g062610.2.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Solyc08g013850.1.1 | No alias | RNA editing factor (CRR21) | 0.03 | Archaeplastida | |
Solyc09g092050.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g04840... | 0.02 | Archaeplastida | |
Solyc11g017370.3.1 | No alias | RNA editing factor (AEF1) | 0.04 | Archaeplastida | |
Zm00001e000301_P001 | No alias | Pentatricopeptide repeat-containing protein At4g35130,... | 0.04 | Archaeplastida | |
Zm00001e005067_P001 | No alias | Pentatricopeptide repeat-containing protein At2g42920,... | 0.03 | Archaeplastida | |
Zm00001e030704_P001 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
Zm00001e032499_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Zm00001e034478_P001 | No alias | Pentatricopeptide repeat-containing protein At3g24000,... | 0.02 | Archaeplastida | |
Zm00001e038629_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Zm00001e039026_P001 | No alias | Pentatricopeptide repeat-containing protein At5g48910... | 0.03 | Archaeplastida | |
Zm00001e039394_P003 | No alias | Pentatricopeptide repeat-containing protein At5g04780,... | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Neighborhood |
MF | GO:0004645 | phosphorylase activity | IEP | Neighborhood |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Neighborhood |
MF | GO:0008184 | glycogen phosphorylase activity | IEP | Neighborhood |
MF | GO:0008373 | sialyltransferase activity | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0050662 | coenzyme binding | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 451 | 477 |
IPR002885 | Pentatricopeptide_repeat | 554 | 574 |
IPR002885 | Pentatricopeptide_repeat | 251 | 275 |
IPR002885 | Pentatricopeptide_repeat | 481 | 511 |
IPR002885 | Pentatricopeptide_repeat | 150 | 172 |
IPR002885 | Pentatricopeptide_repeat | 278 | 324 |
IPR002885 | Pentatricopeptide_repeat | 378 | 424 |
IPR002885 | Pentatricopeptide_repeat | 580 | 627 |
IPR002885 | Pentatricopeptide_repeat | 176 | 224 |
IPR002885 | Pentatricopeptide_repeat | 75 | 121 |
No external refs found! |