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  5. LOC_Os03g52940.1

LOC_Os03g52940.1


Description : no hits & (original description: none)


Gene families : OG0000750 (Archaeplastida) Phylogenetic Tree(s): OG0000750_tree ,
OG_05_0000441 (LandPlants) Phylogenetic Tree(s): OG_05_0000441_tree ,
OG_06_0000262 (SeedPlants) Phylogenetic Tree(s): OG_06_0000262_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52940.1
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT1G76600 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 Archaeplastida
AT5G66580 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 Archaeplastida
GSVIVT01013456001 No alias No description available 0.04 Archaeplastida
Gb_01099 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10165933g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_112931g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_119175g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_126994g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_12798g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_13068g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_4968862g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_82882g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_87298g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g109250.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc04g082960.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e005612_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011957_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e037548_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005384 manganese ion transmembrane transporter activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030026 cellular manganese ion homeostasis IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055071 manganese ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025322 DUF4228_plant 1 170
No external refs found!