LOC_Os03g53490.1


Description : Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana (sp|q9luj4|pp248_arath : 422.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005041 (SeedPlants) Phylogenetic Tree(s): OG_06_0005041_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53490.1
Cluster HCCA: Cluster_676

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.05 Archaeplastida
Gb_31784 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Gb_39082 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.07 Archaeplastida
LOC_Os02g48122.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
LOC_Os03g51840.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 Archaeplastida
LOC_Os05g28720.1 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.01 Archaeplastida
MA_10430437g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_21580g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.06 Archaeplastida
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.02 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.06 Archaeplastida
Zm00001e005655_P001 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 239 263
IPR033443 PPR_long 356 521
IPR002885 Pentatricopeptide_repeat 266 297
IPR002885 Pentatricopeptide_repeat 303 351
No external refs found!