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  5. AMTR_s00004p00098480

AMTR_s00004p00098480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.80

No description available


Gene families : OG0005250 (Archaeplastida) Phylogenetic Tree(s): OG0005250_tree ,
OG_05_0005379 (LandPlants) Phylogenetic Tree(s): OG_05_0005379_tree ,
OG_06_0007449 (SeedPlants) Phylogenetic Tree(s): OG_06_0007449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00098480
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020539.41 No alias No description available 0.02 Archaeplastida
GSVIVT01029154001 No alias No description available 0.04 Archaeplastida
LOC_Os02g17870.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g22850.2 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_261g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c6_19380V3.1 No alias microfibrillar-associated protein-related 0.03 Archaeplastida
Solyc01g100500.3.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e024108_P001 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009730 MFAP1_C 141 421
No external refs found!