LOC_Os03g54170.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0017088 (SeedPlants) Phylogenetic Tree(s): OG_06_0017088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g54170.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00013p00103080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00066p00109320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00127p00060060	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G26310	AGL10, CAL1, CAL	K-box region and MADS-box transcription factor family protein	0.01	Archaeplastida
AT2G22540	SVP, AGL22	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT2G22630	AGL17	AGAMOUS-like 17	0.02	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.05	Archaeplastida
AT5G13790	AGL15	AGAMOUS-like 15	0.02	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	Archaeplastida
AT5G62165	AGL42	AGAMOUS-like 42	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.08	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.08	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os04g52410.2	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os07g01820.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os08g41960.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_13933g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_51624g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.02	Archaeplastida
MA_758606g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
Mp4g11760.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.02	Archaeplastida
Pp3c17_5920V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c1_39760V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc03g114840.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Solyc04g076280.4.1	No alias	MADS-box protein SVP OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.03	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e013738_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e019029_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e022819_P002	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	85	172

External Links

No external refs found!

LOC_Os03g54170.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation