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  5. AMTR_s00004p00111480

AMTR_s00004p00111480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.91

Description : RNA processing.RNA decay.exosome complex.associated co-factors.RRP6L exoribonuclease


Gene families : OG0001601 (Archaeplastida) Phylogenetic Tree(s): OG0001601_tree ,
OG_05_0003483 (LandPlants) Phylogenetic Tree(s): OG_05_0003483_tree ,
OG_06_0003566 (SeedPlants) Phylogenetic Tree(s): OG_06_0003566_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00111480
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
MA_10434071g0020 No alias Protein RRP6-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR012588 Exosome-assoc_fac_Rrp6_N 34 115
IPR002562 3'-5'_exonuclease_dom 256 422
IPR002121 HRDC_dom 476 542
No external refs found!