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  5. LOC_Os03g56950.2

LOC_Os03g56950.2


Description : transcription factor (bHLH). PIF red/far-red light perception transcriptional regulator


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0015558 (LandPlants) Phylogenetic Tree(s): OG_05_0015558_tree ,
OG_06_0015250 (SeedPlants) Phylogenetic Tree(s): OG_06_0015250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g56950.2
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 Archaeplastida
AT1G68240 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01007914001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.04 Archaeplastida
GSVIVT01030846001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
LOC_Os06g30090.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
LOC_Os12g40590.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os12g40730.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c14_23520V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.03 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.05 Archaeplastida
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 235 281
No external refs found!