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  5. LOC_Os03g56960.1

LOC_Os03g56960.1


Description : Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana (sp|q9fmu2|pp380_arath : 377.0)


Gene families : OG0008070 (Archaeplastida) Phylogenetic Tree(s): OG0008070_tree ,
OG_05_0006659 (LandPlants) Phylogenetic Tree(s): OG_05_0006659_tree ,
OG_06_0004717 (SeedPlants) Phylogenetic Tree(s): OG_06_0004717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g56960.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033052001 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
Gb_33452 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.04 Archaeplastida
Solyc02g094310.3.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
Zm00001e009197_P002 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 363 390
IPR002885 Pentatricopeptide_repeat 194 214
IPR002885 Pentatricopeptide_repeat 118 144
IPR002885 Pentatricopeptide_repeat 459 489
No external refs found!