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  5. LOC_Os03g57870.1

LOC_Os03g57870.1


Description : component RFC3 of PCNA sliding clamp loader complex


Gene families : OG0003453 (Archaeplastida) Phylogenetic Tree(s): OG0003453_tree ,
OG_05_0004962 (LandPlants) Phylogenetic Tree(s): OG_05_0004962_tree ,
OG_06_0006400 (SeedPlants) Phylogenetic Tree(s): OG_06_0006400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g57870.1
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00097520 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA... 0.02 Archaeplastida
Cpa|evm.model.tig00000704.48 No alias Cell cycle.interphase.DNA... 0.04 Archaeplastida
Cre16.g679950 No alias Cell cycle.interphase.DNA... 0.03 Archaeplastida
GSVIVT01022436001 No alias Cell cycle.interphase.DNA... 0.06 Archaeplastida
Gb_39448 No alias component RFC3 of PCNA sliding clamp loader complex 0.04 Archaeplastida
MA_10426511g0010 No alias Replication factor C subunit 3 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_168293g0010 No alias component RFC3 of PCNA sliding clamp loader complex 0.03 Archaeplastida
Mp6g16440.1 No alias component RFC3 of PCNA sliding clamp loader complex 0.03 Archaeplastida
Solyc01g020440.3.1 No alias component RFC3 of PCNA sliding clamp loader complex 0.02 Archaeplastida
Zm00001e005947_P001 No alias component RFC3 of PCNA sliding clamp loader complex 0.03 Archaeplastida
Zm00001e011889_P002 No alias component RFC3 of PCNA sliding clamp loader complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!