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  5. LOC_Os03g58050.1

LOC_Os03g58050.1


Description : component RPS18 of SSU proteome


Gene families : OG0001796 (Archaeplastida) Phylogenetic Tree(s): OG0001796_tree ,
OG_05_0001726 (LandPlants) Phylogenetic Tree(s): OG_05_0001726_tree ,
OG_06_0002411 (SeedPlants) Phylogenetic Tree(s): OG_06_0002411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58050.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00178430 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
AMTR_s00142p00099380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.22 Archaeplastida
AT1G34030 No alias Ribosomal protein S13/S18 family 0.17 Archaeplastida
AT4G09800 RPS18C S18 ribosomal protein 0.2 Archaeplastida
Cre06.g272950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.45 Archaeplastida
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01034582001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.32 Archaeplastida
MA_10431843g0010 No alias component RPS18 of SSU proteome 0.12 Archaeplastida
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.35 Archaeplastida
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.4 Archaeplastida
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.4 Archaeplastida
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.25 Archaeplastida
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.33 Archaeplastida
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.11 Archaeplastida
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.4 Archaeplastida
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.04 Archaeplastida
Smo267619 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.38 Archaeplastida
Solyc06g073370.4.1 No alias component RPS18 of SSU proteome 0.24 Archaeplastida
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.11 Archaeplastida
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.45 Archaeplastida
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.47 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Neighborhood
CC GO:0005761 mitochondrial ribosome IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0007029 endoplasmic reticulum organization IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!