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  5. LOC_Os03g58570.1

LOC_Os03g58570.1


Description : SEC12-like protein 1 OS=Arabidopsis thaliana (sp|q8gye0|phf1_arath : 246.0)


Gene families : OG0001652 (Archaeplastida) Phylogenetic Tree(s): OG0001652_tree ,
OG_05_0001619 (LandPlants) Phylogenetic Tree(s): OG_05_0001619_tree ,
OG_06_0005322 (SeedPlants) Phylogenetic Tree(s): OG_06_0005322_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58570.1
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011745001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 154 188
IPR001680 WD40_repeat 123 145
No external refs found!