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LOC_Os03g58600.1


Description : Protein argonaute MEL1 OS=Oryza sativa subsp. japonica (sp|q851r2|mel1_orysj : 1845.0)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58600.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01012529001 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Gb_04817 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_246308g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Solyc01g096750.1.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Zm00001e002044_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030606_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032474 Argonaute_N 210 344
IPR003165 Piwi 697 1015
IPR032472 ArgoL2 546 592
IPR014811 ArgoL1 355 404
IPR003100 PAZ_dom 412 536
IPR032473 Argonaute_Mid_dom 603 680
No external refs found!