1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g58720.1

LOC_Os03g58720.1


Description : pre-60S ribosomal subunit assembly factor (NOP4)


Gene families : OG0005453 (Archaeplastida) Phylogenetic Tree(s): OG0005453_tree ,
OG_05_0006804 (LandPlants) Phylogenetic Tree(s): OG_05_0006804_tree ,
OG_06_0008625 (SeedPlants) Phylogenetic Tree(s): OG_06_0008625_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58720.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Archaeplastida
Cpa|evm.model.tig00000144.75 No alias No description available 0.06 Archaeplastida
Cre02.g104650 No alias No description available 0.07 Archaeplastida
GSVIVT01024222001 No alias No description available 0.09 Archaeplastida
MA_10433709g0020 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida
MA_10436192g0010 No alias No annotation 0.04 Archaeplastida
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.05 Archaeplastida
Pp3c11_7560V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Smo419047 No alias No description available 0.03 Archaeplastida
Solyc01g109990.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e011846_P001 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 106
IPR000504 RRM_dom 304 373
IPR000504 RRM_dom 524 584
No external refs found!