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  5. LOC_Os03g60200.1

LOC_Os03g60200.1


Description : Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana (sp|q8s9m4|pp198_arath : 692.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60200.1
Cluster HCCA: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Zm00001e007462_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 339 386
IPR002885 Pentatricopeptide_repeat 106 138
IPR002885 Pentatricopeptide_repeat 413 437
IPR002885 Pentatricopeptide_repeat 140 168
IPR002885 Pentatricopeptide_repeat 237 284
IPR032867 DYW_dom 512 636
No external refs found!